The one-stop shop for all UTA Department of Biology dissertations written by PhD students for their degree requirements!

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Dissertations from 2024

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CORALS IN CRISIS: A TRANSCRIPTOMIC INVESTIGATION OF STONY CORAL TISSUE LOSS DISEASE, Kelsey M. Beavers

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STRUCTURAL AND MECHANISTIC INSIGHTS INTO DOMAIN-SPECIFIC FUNCTIONS OF THE R2 PROTEIN IN RETROTRANSPOSITION, Joydeep Chatterjee

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THE INFLUENCE OF INTRACELLULAR PHOTOSYMBIOSIS ON THE EVOLUTION AND FUNCTION OF CNIDARIAN IMMUNITY, Madison A. Emery

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A new model for polar growth in mycobacteria: the role of Wag31 and MmpL3 in cell wall synthesis, Neda Habibi Arejan

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THE MORPHOLOGICAL EVOLUTION OF THE INNER EAR IN LACERTOIDEA (SQUAMATA), Cristian Hernandez

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Managing Stress: A Study of Stress Response Mechanisms in Mycobacteria, Augusto C. Hunt Serracin

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Role of Extracytoplasmic Function (ECF) Sigma Factors in the Survival and Symbiosis of Nitrogen-Fixing Bradyrhizobium Under Desiccation Stress and Comparative Analysis of Desiccation-Tolerant Rhizobial Isolates, Mohammad Kamruzzaman

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Exploring ecological drivers of evolution of the brain, cognition, and behavior, Meghan Korte

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Understanding the Origin of Parthenogenesis via Crossing and CRISPR Gene Editing in Daphnia pulex, Thinh Pham

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FRIENDS WITH BENEFITS: HOW PICKING THE RIGHT PARTNER PAYS OFF, Patrick T. Stillson

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CORAL SCAR INVESTIGATION: AN APPLICATION OF MACHINE LEARNING AND COMPUTATIONAL BIOLOGY METHODS TO UNDERSTAND CORAL HOLOBIONT RESPONSE TO VARIOUS TISSUE LOSS DISEASES, Emily W. Van Buren

Dissertations from 2023

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Molecular mechanisms underlying meropenem tolerance in Acinetobacter baumannii, Nowrosh Islam

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Molecular Mechanisms That Regulate the Stress Response In A. baumannii, Feroz Ahmed

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Biodiversity in the Anthropocene, understanding the impacts of land-use change, and species interactions., Alexander H. Murray

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DETERMINING HOW ANTHROPOGENIC CHANGE FILTERS BIOLOGICAL COMMUNITIES AND HOW SPECIES MODIFY THEIR TRAITS IN RESPONSE TO URBANIZATION, Kristopher Warren Row

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Cell division in Mycobacteria: the role of SepIVA, Angela H. Freeman

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Investigation of the Evolution and Structural Basis of Caspases: Insights into Conformational Dynamics, Stability and Allostery, Isha Joglekar

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Evolution of allostery and conformational dynamics of caspases involved in the extrinsic pathway of apoptosis, Mithun Nag Karadi Giridhar

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LEVERAGING POPULATION GENOMICS ACROSS TWO TAXONOMICALLY DIVERSE NON-MODEL SYSTEMS TO UNDERSTAND PATTERNS OF DISEASE TRANSMISSION AND CONSEQUENCES OF HYBRIDIZATION, Zachary Lamar Nikolakis

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ENDOPHYTIC BACTERIA ISOLATED FROM AESCHYNOMENE INDICA PLANTS AND THEIR ROLE IN NOD-FACTOR INDEPENDENT NODULE FORMATION AND NITROGEN FIXATION, Meaghan Alyssa Rose

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Stress Response Pathways and the Origins of Novelty: How Snakes Regenerate Organs and Regulate Venom, Aundrea Kristene Westfall

Dissertations from 2022

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TRANSCRIPTOMIC SIGNAL OF REPRODUCTIVE MODES AND EARLY SPECIATION IN DAPHNIA PULEX-PULICARIA SYSTEM, Trung Viet Huynh

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A DROUGHT-TOLERANT NITROGEN-FIXING SYMBIONT FOR SUSTAINABLE SOYBEAN PRODUCTION, Christian James Peterson

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Microbial Diversity and Immunogenetics of Whiptail Lizards (Aspidoscelis), Kathleen Currie

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ELUCIDATING THE MOLECULAR GENETIC BASIS OF BEHAVIORS RELATED TO THE LOSER EFFECT, Marquerite Alizabeth Herzog

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Signatures of Genome Evolution in Two Divergent Lizard Species from Texas, Jose A. Maldonado

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Niche and dispersal effects on biodiversity, community composition and species co-occurrences in stream ecosystems, Joseph Leonardo Mruzek

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INVESTIGATING GENE EXPRESSION CHANGES IN DAPHNIA: THE ROLE OF EMS-INDUCED MUTATIONS AND REPRODUCTIVE MODES, Marelize Snyman

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THE EVOLUTION OF NEUROSENSORY STRUCTURES: EVALUATING ECOLOGICAL DRIVERS OF BRAIN AND EYE SIZE VARIATION, Kaitlyn J. Howell

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Mechanistic insights into Gram-negative envelope remodeling for protection against severe outer membrane defects, Katie N. Kang

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MECHANISTIC BASIS FOR THE ROLE OF RESISTANCE AND TOLERANCE DETERMINANTS IN ANTIBIOTIC TREATMENT FAILURE, Misha Iqbal Kazi

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Identifying the Distinct Adaptive and Plastic Gene Expression Patterns and Microbial Indicators that Mediate Coral Disease Resistance, Nicholas James Macknight

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PIF transposable elements domestication and genetic novelty in insects, Fatema Ruma

Dissertations from 2021

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The Cellular and Genetic Mechanisms of Stress Response Pathways in Caribbean Coral, Bradford Austin Dimos

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Development and characterization of novel a TCRm antibody and its application as an immune checkpoint blocker, Soroush Ghaffari

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Learning to Swim: An Exploration of the Terrestrial to Aquatic Transition in Elapids (Squamata: Elapidae), Justin Lawrence Jacobs

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Diversity of the Fanged-Frog Complex, Limnonectes kuhlii (Anura: Dicroglossidae) on the Mountainous Regions of Java and Sumatra, Indonesia, Thornton Robert Larson

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DEVELOPMENT OF NEW TECHNIQUES TO DISSECT THE GENETIC BASIS OF POPULATION-LEVEL VARIATION OF RECOMBINATION RATES IN THE DAPHNIA MODEL SYSTEM, Swatantra Neupane

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EFFECTS OF A N2-FIXING BIOFERTILIZER ON THE RHIZOSPHERE MICROBIOME AND THE INFLUENCE OF BIOCHAR ON SOIL FERTILITY AND MICROBIAL COMMUNITIES, Sarbjeet Niraula

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Insights into the role and regulation of the mitochondrial unfolded protein response during pathogen infection, Mohammed Adnan Qureshi

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The Role of the Serine/Threonine Phosphatase PstP in the Mycobacterial Cell Wall Regulation, Farah Shamma

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INVESTIGATING THE MICROEVOLUTIONARY PROCESSES THAT PROMOTE AND MAINTAIN BIODIVERSITY AND TRAIT NOVELTY, Thomas Joseph Firneno

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GENETIC INNOVATION THROUGH GENE DUPLICATION IN DROSOPHILA, Seyedeh Mirsalehi

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CHEMICAL AND GENETIC ANALYSIS OF THE MITOCHONDRIAL UNFOLDED PROTEIN RESPONSE, Mustafi Raisa Amin

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GENOMIC STRUCTURE AND DIVERSITY IN NEOTROPICAL HERPETOFAUNA: THE ROLE OF DEMOGRAPHIC HISTORY AND GENE FLOW, Danielle George Rivera

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EFFECTS OF pH SHOCK AND HEAT STRESS ON THE GROWTH OF NITROGEN-FIXING BACTERIA AND THEIR PHOSPHATE SOLUBILIZATION, Ishanka Udayangi Hemachandra

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FUNCTIONAL GENOMICS REVEALS THE MECHANISMS AND EVOLUTION OF EXTREME PHYSIOLOGICAL ADAPTATIONS IN SNAKES, Blair William Perry

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ELUCIDATING THE EVOLUTION OF SEX CHROMOSOME DOSAGE COMPENSATION USING BEETLES, Balan Ramesh

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EVOLUTIONARY AND BIOCHEMICAL CHARACTERIZATION OF EFFECTOR CASPASES, Suman Shrestha

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THE MECHANISM OF ENZYME STABILITY AND SPECIFICITY IN CASPASE-3, Liqi Yao

Dissertations from 2020

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Stream Biodiversity and Co-occurrence Network Topology along Sub-continental to Global Nutrient and Land Use Gradients, William Robert Budnick

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POPULATION GENOMICS AND CONSERVATION OF TEXAS CAVE AND SPRING SALAMANDERS (PLETHODONTIDAE: EURYCEA), Andrew Brian Corbin

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THE EVOLUTION OF LIFE HISTORIES AND PHENOTYPIC PLASTICITY ACROSS ENVIRONMENTAL GRADIENTS IN DAPHNIA SP., Michelle Renee Swan Packer

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Combating Bacterial Infections with In-Situ Detection and Antibiotic Technology, Paul James Renick

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TAXONOMY, SYSTEMATICS, BIOGEOGRAPHY, AND CONSERVATION OF TOADS (ANURA: BUFONIDAE) IN THE SUNDA SHELF OF INDONESIA, Goutam Chandra Sarker

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Population and reproductive dynamics of zebra mussels (Dreissena polymorpha) in Texas reservoirs: Predicting the sustainability of zebra mussel populations in warmer waters, Heather Mae Arterburn

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Completion of RLE LINE Integration Involves an Open "4-Way" Branched DNA Intermediate, Brijesh B. Khadgi

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Ensemble and Consensus Species Distribution Modeling Approaches Applied to Freshwater Fish, Melissa Jean Walsh

Dissertations from 2019

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DEVELOPING APPROACHES THAT LEVERAGE NEXT GENERATION SEQUENCING TO STUDY BROAD BIOLOGICAL PROBLEMS, Nicole Hales

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Leveraging the dynamic repeat element landscape of squamate reptile genomes to understand broad patterns of Vertebrate genome evolution and transposable element biology, Giulia IM Pasquesi

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Functional Analysis of Nuclear-Encoded Mitochondrial Gene Duplicates with Testis-Biased Expression in Drosophila melanogaster, Mohammadmehdi M. Eslamieh

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Toughing it out: understanding the interplay of phenotypic plasticity and evolution in stressful environments, Michael K. Gillis

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Understanding the role direct contact, toxicity, and mixotrophy play in the population dynamics of Prymnesium parvum, Coridon Laws

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STRESS RESPONSES OF CORALS AND THEIR SYMBIOTIC PARTNERS, Contessa A. Ricci

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WHO CARES ABOUT MODELS WHEN YOU HAVE GENOMES?, Richard Hunter Adams

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The evolution of complexity: tests of the ecological drivers of eye size evolution in nature, Shannon Marie Beston

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UNCOVERING GENOMIC INSIGHTS TO THE DYNAMICS AND MECHANISMS OF SPECIATION USING LIALIS BURTONIS AND HETERONOTIA BINOEI, James E. Titus-McQuillan

Dissertations from 2018

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Using snake genomes to illuminate the patterns and mechanisms of rapid adaptation, Daren Carter Card

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Domestication of PIF transposable elements transposases as regulatory proteins in Drosophila melanogaster, Diwash Jangam

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Insertion Mechanism of Long Interspersed Elements (LINEs) and the role of the Linker Domain, Monika Pradhan

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Disease in a Changing Ocean: Ecoimmunological Approaches to Coral Reef Ecology, Lauren Elizabeth Fuess

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Circadian Orchestration of Symbiotic Genes in Photosynthetic Nitrogen-Fixing Bacteria, Dylan Parks

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Rattlesnake genomics illustrate patterns of speciation, adaptation, and links between genome structure and function, Drew Roberts Schield

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USING INTEGRATED APPROACHES TO STUDY THE SYSTEMATICS OF SCINCID LIZARDS IN THE LOWER SUNDA SHELF, Panupong Thammachoti

Dissertations from 2017

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DIVERSIFICATION ON CONTINENTS AND ISLANDS: A HERPETOLOGICAL PERSPECTIVE, Kyle Anthony O'Connell

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Growth and stress response mechanisms underlying post-feeding organ regenerative growth in snakes, Audra Leann Andrew

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ARTHROPOD FOOD WEBS IN ARCTIC TUNDRA: TROPHIC INTERACTIONS AND RESPONSES TO GLOBAL CHANGE, Ashley Lila Asmus

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PROTEIN/NUCLEIC-ACID STRUCTURE AND SEQUENCE REQUIREMENTS FOR SPECIFYING SECOND-STRAND CLEAVAGE AND SECOND-STRAND SYNTHESIS DURING THE INTEGRATION OF THE SITE-SPECIFIC LINE R2Bm, Aruna Govindaraju

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GLOBULAR DOMAIN STRUCTURE AND FUNCTION OF RESTRICTION-LIKE-ENDONUCLEASE BEARING LONG INTERSPERSED NUCLEOTIDE ELEMENTS, Mst Murshida Mahbub

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EFFICACY OF A SERIES OF ORGANOMETALLIC POLYMERS AS ANTI-CANCER AND ANTIVIRAL AGENTS, Lindsey Caitlin Miller

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Impacts of landscape and past climate on patterns of hybridization and genetic diversity in Plestiodon tetragrammus and P. multivirgatus, Matthew Moseley

Dissertations from 2016

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Origins and Maintenance of Diversity in a Vertebrate Parthenogen, Alex Scott Hall

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RESPONSE OF MICROBIAL NETWORKS AND MICROBIOMES TO THE FOREST-TO-PASTURE CONVERSION IN AMAZON SOILS, Md Abdul Wadad Khan

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Insights into the genomic and metabolic adaptations of Termite Associated Verrucomicrobia strains using functional and comparative genomics, Malini Sharadkumar Kotak

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GENETIC BASIS OF MELANIN PIGMENTATION AND SEXUAL DICHROMATISM IN DOMESTIC PIGEONS, Shreyas Krishnan

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Phylogeography of the American Green Treefrog Species Group, Paul Nathaniel Pasichnyk

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TRACING THE DAWN OF THE ELAPIDAE THROUGH THE MOLECULAR SYSTEMATICS AND HISTORICAL BIOGEOGRAPHY OF OLD WORLD CORALSNAKES, Utpal Smart

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Urban Ecology in North Texas: Native Plants and Nitrogen Deposition, Michelle Lynn Green

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PHENOTYPIC EVOLUTION OF MIDDLE AMERICAN TREE FROGS: ALLOMETRIC EFFECTS, AND LARVAL AND ADULT EVOLUTIONARY INDEPENDENCE, David Antonio Sánchez

Dissertations from 2015

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Biological Evaluation Of Membrane-active Compounds As Treatment For Clostridium Difficile Infection, Md Zahidul Alam

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Proximate Behavioral And Morphological Mechanisms That May Mediate Intraguild Predation Stability In The Anisoptera, Benjamin Thomas Allen

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Synthesis And Phylogenetic Comparative Analyses Of The Causes And Consequences Of Karyotype Evolution In Arthropods, Heath Blackmon

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The Spatial Ecology Of The Comanche Harvester Ant, Pogonomyrmex comanche (Hymenoptera: Formicidae), Ann Burgess Mayo

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The Venomous Rattlesnakes And New World Coral Snakes: Molecular Systematics, Biogeography And The Evolution Of Venom Systems, Jacobo Reyes Velasco

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Plant Immune Defenses Against The Human Pathogens Escherichia coli O157:H7 And Salmonella enterica, Debanjana Roy

Dissertations from 2014

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Seasonal And Habitat-based Prey Diversity Of Bobcats, Lynx Rufus, In Big Bend National Park, Texas, Ellen Stringer Browning

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Modulation Of Innate Immunity In Arabidopsis, Shweta Panchal

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Evolution Of Sex Ratios And Sex Determination Mechanisms: Lessons From Nematodes With Three Genders, Manish Parihar

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The Genetic Architecture Of Variation In Humans And Dogs, Eldon Goodwin Prince

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A Study Of The Function Of Two Nuclear Transport Retrogenes (dntf-2r And Ran-like) In Drosophila Melanogaster, Susana Filipa Simoes Lopes Domingues