Graduation Semester and Year

Summer 2025

Language

English

Document Type

Dissertation

Degree Name

Doctor of Philosophy in Physics and Applied Physics

Department

Physics

First Advisor

Yujie Chi

Second Advisor

Qiming Zhang

Third Advisor

Muhammad Huda

Fourth Advisor

Mingwu Jin

Fifth Advisor

Amir Shahmoradi

Abstract

Cancer remains a significant public health challenge, with treatments like radiation therapy forming a cornerstone of modern care. To address this challenge, advanced computer simulations can improve radiotherapy in two primary ways. From one hand, mechanistic simulations help elucidate the fundamental radiobiological working principles, which could contribute to the clinical advancements from a bottom-up framework. On the other hand, modality simulations could help design better clinical systems with better detection and therapeutic capabilities. This research enhances these critical simulation tools by introducing two significant developments.

First, this work introduces a metaphase DNA model into a microscopic Monte Carlo simulation framework to help simulate the radiation-induced DNA damage effects for cells at metaphase. This model has been successfully incorporated into our in-house GPU-based microscopic Monte Carlo simulation engine for radiation-induced DNA damage simulation, gMicroMC. This new development effort provides crucial insights into how a cell's cycle impacts treatment effectiveness.

Second, this research expanded the function capability for our GPU-based Monte Carlo simulation engine for PET scanner simulation, gPET. The initial gPET only supported the simulation of single-ring, mono-layer PET scanners. In my work, I expanded gPET pipeline to support multi-layer PET scanner geometries, which was then used to evaluate a novel dual-layer small animal PET scanner design.

Together, these developments provide the scientific community with more powerful and versatile tools, helping to accelerate the creation of cancer therapies that are more effective and precisely targeted to the individual.

Keywords

Monte Carlo Particle Transport GPU

Disciplines

Biological and Chemical Physics | Physics

License

Creative Commons Attribution 4.0 International License
This work is licensed under a Creative Commons Attribution 4.0 International License.

Available for download on Thursday, August 20, 2026

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