Spectroscopic and mechanistic investigation of the enzyme mercaptopropionic acid dioxygenase (MDO), the role of the conserved outer-sphere 'catalytic triad' in directing promiscuous substrate-specificity

Author

Sinjinee Sardar

Graduation Semester and Year

2018

Language

English

Document Type

Dissertation

Degree Name

Doctor of Philosophy in Chemistry

Department

Chemistry and Biochemistry

First Advisor

Brad Pierce

Second Advisor

Jongyun Heo

Abstract

Mercaptopropionate dioxygenase (MDO) from Aztobacter Vinelandii is a non-heme mononuclear iron enzyme that catalyzes the oxygen dependent conversion of 3-mercaptopropionic acid (3mpa) to produce 3-sulfinopropinioic acid (3spa). Nearly, all thiol dioxygenases have a conserved ‘catalytic triad’ within the active site, consisting of three outer Fe-coordination sphere residues S155, H157 and Y159. With the notable exception of mammalian cysteamine (2-aminoethanethiol) dioxygenase (ADO), this ‘catalytic triad’ is universally conserved across phylogenic domains. X-ray crystallographic studies clearly show a hydrogen bond network connecting the ‘catalytic triad’ to the mononuclear iron site; however, its influence on substrate specificity and catalytic efficiency is poorly understood. In this work, kinetic and spectroscopic characterization of AvMDO is presented, focusing especially on the role of the conserved ‘catalytic triad’ on enzyme catalysis. In addition, pH/pD-dependent to solvent kinetic isotope (SKIE) experiments and proton inventory experiments were performed to investigate rate limiting proton-dependent steps during catalysis. Complementary viscosity studies are presented to probe diffusion limited steps in steady-state reactions. Comparative studies were performed for reactions with L-cysteine and 3mpa as a substrate, for the active site variants, H157N and Y159F to investigate the role of specific residues within the ‘catalytic triad’. Taken together with supporting EPR and Mössbauer spectroscopic studies, a mechanistic model is proposed in which the ‘catalytic triad’ serves to gate proton delivery to the substrate-bound Fe-site. These studies suggest that the primary role of the ‘catalytic triad’ is to neutralize the negative charge of the substrate-carboxylate group in the rate-limiting non-chemical steps leading up to O2-activation.

Keywords

Enzyme, Enzyme kinetics, Dioxygenase enzymes, MDO, Mercaptopropionate dioxygenase

Disciplines

Chemistry | Physical Sciences and Mathematics

License

This work is licensed under a Creative Commons Attribution-NonCommercial-Share Alike 4.0 International License.

Comments

Degree granted by The University of Texas at Arlington

Recommended Citation

Sardar, Sinjinee, "Spectroscopic and mechanistic investigation of the enzyme mercaptopropionic acid dioxygenase (MDO), the role of the conserved outer-sphere 'catalytic triad' in directing promiscuous substrate-specificity" (2018). Chemistry & Biochemistry Dissertations. 248.
https://mavmatrix.uta.edu/chemistry_dissertations/248